About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28129305_28145033_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28129305 - 28145033
Intron Length:
15729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGGGA
5'SS Class:
major
3'SS Sequence:
CTATTGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATCTTTTTACAT
Flanking Amino Acid:
NSKTSRSESKV*
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
59.1
39.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.2
0.57
1
68.8
41.7
Minor 5ss
34
-1.8
3.6
46.6
48.7
Minor BPS
53.4
0.19
1.7
70.46
41

Associated Gene:

Gene:
ADRB1
Ensembl Gene ID:
ENSAPLG00000026596
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037079
28127269 - 28145039
17771