Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28165656_28167636_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28165656 - 28167636

Intron Length:

1981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGCTA

5'SS Class:

major

3'SS Sequence:

ATTCTTTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TTATTCCTAATA

Flanking Amino Acid:

TVDRLQDQHQRDEQDISALK

Intron Amino Acid Position:

570

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

63.1

42.9

Major BPS

81.9

0.79

0.9

80.1

Major PPT

79.6

0.67

36.5

Minor 5ss

32.6

-2

3.7

47.1

48.3

Minor BPS

66.1

0.5

1.6

76.63

34.1

Associated Gene:

Gene:

CCDC186

Ensembl Gene ID:

ENSAPLG00000013137

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045637

28160271 - 28182098

21828

ENSAPLT00000013706

28160317 - 28181240

20924