Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28167780_28168536_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28167780 - 28168536

Intron Length:

757

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGTGT

5'SS Class:

major

3'SS Sequence:

TTTTCCCATTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

AGTTTCTGATTT

Flanking Amino Acid:

MDELRTLRTKVKCLEDERLR

Intron Amino Acid Position:

523

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.2

70.4

42.5

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

0.67

0.8

28.7

Minor 5ss

-0.7

3.3

46.2

Minor BPS

53.6

0.19

1.7

71.72

39.3

Associated Gene:

Gene:

CCDC186

Ensembl Gene ID:

ENSAPLG00000013137

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045637

28160271 - 28182098

21828

ENSAPLT00000013706

28160317 - 28181240

20924