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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28168624_28169416_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28168624 - 28169416
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTAAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TACTCTTTAAAA
Flanking Amino Acid:
QMQEKSDHLEVHHAKIKEVE
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
58.6
0.19
1.1
60.8
37.9
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
70.7
0.65
1.3
73.69
37.9

Associated Gene:

Gene:
CCDC186
Ensembl Gene ID:
ENSAPLG00000013137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045637
28160271 - 28182098
21828
ENSAPLT00000013706
28160317 - 28181240
20924