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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28180299_28181944_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
28180299 - 28181944
Intron Length:
1646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
87.5
0.84
0.8
84.9
28.4
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
CCDC186
Ensembl Gene ID:
ENSAPLG00000013137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045637
28160271 - 28182098
21828