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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28193092_28194235_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28193092 - 28194235
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
GTATTGTTAAGA
Flanking Amino Acid:
HAKYSGNKVAGSSMEGTTSR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
85.1
0.79
0.6
85.1
22.4
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
48.9
-0
2.3
64.26
42.1

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221