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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28194634_28195040_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28194634 - 28195040
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ATTTCTTTGACT
Flanking Amino Acid:
TKTCHRCGLFGSLRCSRCRQ
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
83.8
1.15
0.9
93.38
27.4

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221