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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28195147_28196253_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28195147 - 28196253
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
HRVVCEPVKQNSSNNNGGKI
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83
0.74
0.9
76.7
36.2
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221