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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28196315_28197216_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28196315 - 28197216
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
CTCTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
GCTCTTTTAAAT
Flanking Amino Acid:
AKTETGLYLKGNSTSVDSLK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.7
36.4
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
71.6
0.49
0.9
69.7
34.5
Minor 5ss
39.4
-1.2
3.3
56.4
48
Minor BPS
59.8
0.39
1.4
70.85
40

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221