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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28204529_28205902_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28204529 - 28205902
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TACTGTTTGACT
Flanking Amino Acid:
PAQAIRCTLAGVKPLTGAWS
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78.6
37.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.3
0.68
0.8
77.9
36.2
Minor 5ss
32.5
-2
3.5
47.3
48.3
Minor BPS
59.7
0.39
1.8
75.42
41.9

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221