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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28206152_28206883_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28206152 - 28206883
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTCTTTTATCT
Flanking Amino Acid:
TEISNVKQANEDTANKKKWR
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.7
0.71
0.8
74.5
35.4
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
60.7
0.41
1.6
76.38
40.7

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221