About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28208976_28209450_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28208976 - 28209450
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
GCAGCATGAAGC
Flanking Amino Acid:
SNLPNKSDNKETSVGRWKPI
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
80.9
0.7
0.7
80.5
24.8
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
41.7
-0.6
2
46.01
42.2

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221