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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28209568_28209786_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28209568 - 28209786
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTACAT
Flanking Amino Acid:
LFYAIPVQSKDHDKLLKQMI
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.7
0.74
0.7
78.1
23.8
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
56.3
0.28
2
78.39
43.5

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221