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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28209898_28210801_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28209898 - 28210801
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGAA
5'SS Class:
major
3'SS Sequence:
TTGATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTTTGATCT
Flanking Amino Acid:
LGEACCARFSGNGRWYRALV
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.3
36.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.9
81.2
36.4
Minor 5ss
22.6
-3.2
3.2
19.8
37.9
Minor BPS
56
0.27
1.7
75.91
41.2

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221