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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28210970_28211245_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28210970 - 28211245
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTCATAGAACA
Flanking Amino Acid:
PFQTITCSLAGIKKAECSPL
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.7
0.85
0.7
80.3
31.8
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
45.5
-0.3
1.8
59.88
39.4

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221