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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28211462_28211669_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28211462 - 28211669
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATTTACT
Flanking Amino Acid:
KAENSDIVHQGNGSETRCCC
Intron Amino Acid Position:
1024

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.9
34.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
90.8
0.92
0.6
88.2
21.6
Minor 5ss
40.7
-1
3.1
60.4
44
Minor BPS
60.2
0.4
2
78.5
43.2

Associated Gene:

Gene:
TDRD1
Ensembl Gene ID:
ENSAPLG00000012609
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013130
28192249 - 28212469
20221