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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28235352_28236007_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28235352 - 28236007
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTGACTAATT
Flanking Amino Acid:
GKGTVLQKAKEWEKKGAS*
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.6
0.67
1
77
36.8
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
51.2
0.12
2.3
81.93
39.6

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895