Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28236137_28236586_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28236137 - 28236586

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTGGG

5'SS Class:

major

3'SS Sequence:

ATTTGTATCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTCTACTATTT

Flanking Amino Acid:

TTHLENAAPRTQTKTASPGN

Intron Amino Acid Position:

757

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

47.1

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

72.1

0.5

0.9

66.4

38.9

Minor 5ss

30.3

-2.3

3.3

43.1

Minor BPS

45.6

-0.2

2.1

71.07

39.9

Associated Gene:

Gene:

AFAP1L2

Ensembl Gene ID:

ENSAPLG00000012051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012585

28234325 - 28247219

12895