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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28237469_28237647_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28237469 - 28237647
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CTTCTCTGAATT
Flanking Amino Acid:
PAHRPKLPLPVAAVETKLGK
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
63.8
0.51
1.4
77.82
38.8

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895