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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28237829_28237915_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28237829 - 28237915
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAC
5'SS Class:
major
3'SS Sequence:
TCTGCTGCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
ATCATCTCACCT
Flanking Amino Acid:
SGKAMETSEQKQPEKPEPEE
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76
33.1
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
74.8
0.56
0.9
65.4
41.1
Minor 5ss
42.2
-0.9
2.5
54
43.3
Minor BPS
48.3
-0
1.9
66.8
43.9

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895