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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28238935_28239226_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28238935 - 28239226
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACGTCCA
5'SS Class:
major
3'SS Sequence:
TGCCTGTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TCCCTCCTGACA
Flanking Amino Acid:
CIVSAAKNSFFLMQRKYSEP
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.2
57.4
41.4
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73.8
0.54
0.9
67.3
38
Minor 5ss
36
-1.6
3.1
47.9
42
Minor BPS
49.4
-0
1.7
60
40

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895