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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28239373_28240992_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28239373 - 28240992
Intron Length:
1620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
GGTCACCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
CCACCCATAACA
Flanking Amino Acid:
HNGEERLILEAKSSEEMGHW
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
62.2
0.28
0.9
54.8
36.1
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
56
0.18
1.7
62.8
42.9

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895