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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28241205_28241802_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28241205 - 28241802
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
GACCCAATAACC
Flanking Amino Acid:
DSPERSLETSSYLNVFVNSQ
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
60.3
0.26
1
65.5
28
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
47.2
-0.2
1.9
56.72
40.6

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895