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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28242734_28243582_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28242734 - 28243582
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTGAC
5'SS Class:
major
3'SS Sequence:
GTCTTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
CTGTACTCACCA
Flanking Amino Acid:
SKDQAEQWLRVIQETSGLQC
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
66.7
39.6
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
72.9
0.52
0.9
67.9
37.7
Minor 5ss
28
-2.5
2.9
27.1
36.4
Minor BPS
47.3
-0.2
2
60.32
45.5

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895