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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28243763_28244023_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28243763 - 28244023
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTATA
5'SS Class:
major
3'SS Sequence:
CTTCCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTGTCTCTCACT
Flanking Amino Acid:
LCVIKDTRLLCYKSSKDHNP
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
76
34.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
83.3
0.75
0.7
76
32.5
Minor 5ss
32.9
-1.9
3
38.7
41.6
Minor BPS
56
0.27
2.1
80.2
42

Associated Gene:

Gene:
AFAP1L2
Ensembl Gene ID:
ENSAPLG00000012051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012585
28234325 - 28247219
12895