Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28260430_28297067_R

Intron Information:

Intron Rank:

134435

Intron Class:

major

Intron Phase:

Intron Coordinates:

28260430 - 28297067

Intron Length:

36638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTCCCGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

ACTTTGCTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

63.9

42.4

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

75.1

0.56

0.8

70.4

30.6

Minor 5ss

23.2

-3.1

3.2

28.7

43.7

Minor BPS

48.3

-0.1

2.3

65.71

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019605

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019912

28259834 - 28297563

37730