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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28315139_28318120_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28315139 - 28318120
Intron Length:
2982

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACGTTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACGTTGTTAACA
Flanking Amino Acid:
VSMPNMLEPKIFPYEMLMVT
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
87.7
23.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
67.5
0.39
1
61.8
42.9
Minor 5ss
22.6
-3.2
3.8
32.5
42.3
Minor BPS
54.9
0.15
2.1
64.64
42.3

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596