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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28318196_28319447_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28318196 - 28319447
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
GTATCTGATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATACCTGTATC
Flanking Amino Acid:
DVSGGVRDFQSLPDGHVPGM
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
68.5
0.42
1.1
62.3
43.2
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
51.1
0.02
1.8
65.45
40

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596