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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28319456_28320210_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28319456 - 28320210
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
AGCAGATGAAAT
Flanking Amino Acid:
SYGDVSGGVRDFQSLPDGHV
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
87
0.83
0.7
84.4
30.5
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
39.1
-0.7
2
51.77
41.7

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596