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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28322448_28324641_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28322448 - 28324641
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGGAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATGGAAGC
Flanking Amino Acid:
WPGPPSLAAIGSDMRRRSSG
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
64
0.32
1.1
59.5
45.1
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
43.7
-0.5
2.4
63.77
41.9

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596