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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28327174_28329236_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28327174 - 28329236
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCAATTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCAATT
Flanking Amino Acid:
AQAPKHFHVPDQGVNIYRKP
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74
0.54
0.9
67.5
37.4
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
70.4
0.72
1.5
83.48
38.1

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596