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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28329342_28339452_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28329342 - 28339452
Intron Length:
10111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTGGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTCTTTCATT
Flanking Amino Acid:
SRSPQHFHRPGNEPSSGRNS
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.5
36.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
64.6
0.33
1.7
73.9
35.4
Minor 5ss
29.6
-2.3
3.5
35.6
42.2
Minor BPS
61.7
0.45
1.7
76.34
41.1

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596