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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28340918_28345418_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28340918 - 28345418
Intron Length:
4501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
DRQERQSLGESPRTLSPTPS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.2
0.75
0.9
77.2
36.9
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596