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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28348051_28358392_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28348051 - 28358392
Intron Length:
10342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGGCTCTGAAAA
Flanking Amino Acid:
QSTKTEEKLRPTRTSSESIY
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
65.9
42.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
42.8
-0.8
2.9
47.2
48.2
Minor BPS
50.2
0
1.6
59.85
39.3

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596