About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28358452_28362657_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
28358452 - 28362657
Intron Length:
4206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
ACACCTCCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACAC
Flanking Amino Acid:
FTEGEEMYLQGSTVWHPDCK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
76.1
39.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
53.7
0.08
1
52.3
30.6
Minor 5ss
32.6
-2
3.1
40.4
45.5
Minor BPS
54.8
0.13
1.7
66.32
39.9

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596