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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28362746_28382196_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28362746 - 28382196
Intron Length:
19451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
GATCCCTCATCT
Flanking Amino Acid:
HQFITGKVLEAGDKHYHPSC
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
76.2
0.65
1
67
39.8
Major PPT
76.3
0.59
0.8
76.7
31.9
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
53.6
0.19
1.9
72.5
43.5

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596