About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28382291_28383446_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28382291 - 28383446
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTTGTGGATT
Flanking Amino Acid:
GKVLTGEYISKDGAPYCEKD
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
48.3
-0
2.2
73.11
38.1

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596