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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28397705_28398058_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28397705 - 28398058
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACT
Flanking Amino Acid:
HPTCFACTVCKRPFPPGDRV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.8
0.67
0.9
70.4
40.8
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
82
1.08
1
90.89
33.1

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596