About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28410163_28451191_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28410163 - 28451191
Intron Length:
41029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCCT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
AATTCTTTAGGT
Flanking Amino Acid:
EIHPSSENGKVAHPQEPHHP
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
69.2
41.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
39.3
-1.2
2.7
52
44.5
Minor BPS
57.9
0.32
1.9
75.44
41.4

Associated Gene:

Gene:
ABLIM1
Ensembl Gene ID:
ENSAPLG00000011705
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012309
28313636 - 28451231
137596