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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28518893_28521406_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28518893 - 28521406
Intron Length:
2514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTATATAACC
Flanking Amino Acid:
DPYLVNFFLEVIQDPVLHLC
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74.7
0.56
0.8
74.5
29.1
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
64.9
0.45
1.8
80.46
33.7

Associated Gene:

Gene:
FAM160B1
Ensembl Gene ID:
ENSAPLG00000011308
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029903
28506676 - 28538419
31744