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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28521446_28523112_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28521446 - 28523112
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
AAATGCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AGCTTTATAATT
Flanking Amino Acid:
DPVLHLCRRQNKLKALASKE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
70.6
0.46
1
62.6
43.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
52.9
0.17
1.6
67.14
38.2

Associated Gene:

Gene:
FAM160B1
Ensembl Gene ID:
ENSAPLG00000011308
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029903
28506676 - 28538419
31744