Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28532416_28536801_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28532416 - 28536801

Intron Length:

4386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTACAT

U12 Branch Point Sequence:

TTTTCCTTGTTT

Flanking Amino Acid:

FERMGRILDQPYDVNLQVTS

Intron Amino Acid Position:

650

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

61.4

0.28

1.1

36.5

Major PPT

92.4

0.95

0.7

88.3

28.9

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

54.5

0.22

3.5

90.9

33.1

Associated Gene:

Gene:

FAM160B1

Ensembl Gene ID:

ENSAPLG00000011308

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029903

28506676 - 28538419

31744

ENSAPLT00000011792

28506676 - 28538592

31917