About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28538217_28538313_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28538217 - 28538313
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
RLLGLEPEGPIIDHMTLLEG
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.81
0.7
84.4
23.4
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
FAM160B1
Ensembl Gene ID:
ENSAPLG00000011308
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029903
28506676 - 28538419
31744
ENSAPLT00000011792
28506676 - 28538592
31917