About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28567296_28568577_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28567296 - 28568577
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTCTTGTAAT
Flanking Amino Acid:
LNLLKEKLLAEAGVQTNGNK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.8
0.9
0.7
85.1
28.4
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
50
0.08
1.9
73.83
43

Associated Gene:

Gene:
TRUB1
Ensembl Gene ID:
ENSAPLG00000006808
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034908
28566756 - 28596234
29479
ENSAPLT00000007072
28566756 - 28598141
31386