Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28572732_28587163_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28572732 - 28587163

Intron Length:

14432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCGTTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

GGCTCACTAATC

Flanking Amino Acid:

LLKTILAGSKKYTAIGLLGK

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.5

0.8

87.7

27.9

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

84.2

0.77

0.8

76.7

37.4

Minor 5ss

33.9

-1.8

3.3

47.8

47.9

Minor BPS

-0.1

1.9

58.09

40.4

Associated Gene:

Gene:

TRUB1

Ensembl Gene ID:

ENSAPLG00000006808

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034908

28566756 - 28596234

29479

ENSAPLT00000007072

28566756 - 28598141

31386