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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28594652_28596019_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28594652 - 28596019
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAAGT
Flanking Amino Acid:
VRSLVSDIGKELSTCASMQE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.7
0.58
0.8
70.7
34.8
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
58.7
0.35
2
78.66
44.1

Associated Gene:

Gene:
TRUB1
Ensembl Gene ID:
ENSAPLG00000006808
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034908
28566756 - 28596234
29479
ENSAPLT00000007072
28566756 - 28598141
31386