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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2867920_2867964_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2867920 - 2867964
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
CCTGCAGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
VTASARLLWQRSCGKCLQAG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
61.3
0.26
0.9
50.9
38.3
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
MICU1
Ensembl Gene ID:
ENSAPLG00000008509
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022253
2867759 - 2919625
51867