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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28694998_28697040_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28694998 - 28697040

Intron Length:

2043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AATTTTTTATGC

Flanking Amino Acid:

KTKCTWLIEGYPNAILRLRF

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

86.4

28.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.2

0.93

0.6

84.1

30.8

Minor 5ss

43.5

-0.7

2.9

62.1

37.1

Minor BPS

49.4

-0

1.8

60.94

38.7

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680