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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28699328_28702848_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28699328 - 28702848
Intron Length:
3521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATCCCTTATTT
Flanking Amino Acid:
YNLTGFNIFYSINSCPNNCS
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
68.9
0.67
1.6
82.93
38.1

Associated Gene:

Gene:
ATRNL1
Ensembl Gene ID:
ENSAPLG00000006869
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026820
28652795 - 28942943
290149
ENSAPLT00000046926
28652795 - 29144602
491808
ENSAPLT00000026024
28652795 - 29144602
491808
ENSAPLT00000044897
28653737 - 29049692
395956
ENSAPLT00000007205
28653737 - 29107578
453842
ENSAPLT00000042540
28653737 - 29017416
363680
ENSAPLT00000033645
28652795 - 28990031
337237
ENSAPLT00000047672
28653737 - 29091421
437685