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Intron Name: Anas_platyrhynchos_platyrhynchos_6_28703058_28713038_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28703058 - 28713038

Intron Length:

9981

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTACAAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

GTTTACAAAACA

Flanking Amino Acid:

KLCVCNDSWQGPDCSLNVPS

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

73.5

0.59

81.3

29.9

Major PPT

62.5

0.28

1.1

56.6

42.3

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

49.8

-0

2.1

70.46

41.1

Associated Gene:

Gene:

ATRNL1

Ensembl Gene ID:

ENSAPLG00000006869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026820

28652795 - 28942943

290149

ENSAPLT00000046926

28652795 - 29144602

491808

ENSAPLT00000026024

28652795 - 29144602

491808

ENSAPLT00000044897

28653737 - 29049692

395956

ENSAPLT00000007205

28653737 - 29107578

453842

ENSAPLT00000042540

28653737 - 29017416

363680

ENSAPLT00000033645

28652795 - 28990031

337237

ENSAPLT00000047672

28653737 - 29091421

437685